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NAR Top Articles - Computational Biology

Computational Biology

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September 2016

Pathway analysis from lists of microRNAs: common pitfalls and alternative strategy
Godard, Patrice; van Eyll, Jonathan
Nucleic Acids Res. 2015, 43, 3490-3497
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Microbial species delineation using whole genome sequences
Varghese, Neha J.; Mukherjee, Supratim; Ivanova, Natalia; Konstantinidis, Konstantinos T.; Mavrommatis, Kostas; Kyrpides, Nikos C.; Pati, Amrita
Nucleic Acids Res. 2015, 43, 6761-6771
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Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer
Sebestyen, Endre; Zawisza, Michal; Eyras, Eduardo
Nucleic Acids Res. 2015, 43, 1345-1356
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Modeling the relationship of epigenetic modifications to transcription factor binding
Liu, Liang; Jin, Guangxu; Zhou, Xiaobo
Nucleic Acids Res. 2015, 43, 3873-3885
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Identifying core gene modules in glioblastoma based on multilayer factor-mediated dysfunctional regulatory networks through integrating multi-dimensional genomic data
Ping, Yanyan; Deng, Yulan; Wang, Li; Zhang, Hongyi; Zhang, Yong; Xu, Chaohan; Zhao, Hongying; Fan, Huihui; Yu, Fulong; Xiao, Yun; Li, Xia
Nucleic Acids Res. 2015, 43, 1997-2007
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Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)
Skinnider, Michael A.; Dejong, Chris A.; Rees, Philip N.; Johnston, Chad W.; Li, Haoxin; Webster, Andrew L. H.; Wyatt, Morgan A.; Magarvey, Nathan A.
Nucleic Acids Res. 2015, 43, 9645-9662
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Accurate multiplexing and filtering for high-throughput amplicon-sequencing
Esling, Philippe; Lejzerowicz, Franck; Pawlowski, Jan
Nucleic Acids Res. 2015, 43, 2513-2524
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Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate
Gorochowski, Thomas E.; Ignatova, Zoya; Bovenberg, Roel A. L.; Roubos, Johannes A.
Nucleic Acids Res. 2015, 43, 3022-3032
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Deciphering the rules by which dynamics of mRNA secondary structure affect translation efficiency in Saccharomyces cerevisiae
Mao, YH; Liu, HL; Liu, YL; Tao, SH
Nucleic Acids Res. 2014, 42, 4813-4822
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Reconstructing genome-scale metabolic models with merlin
Dias, Oscar; Rocha, Miguel; Ferreira, Eugenio C.; Rocha, Isabel
Nucleic Acids Res. 2015, 43, 3899-3910
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