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December 2015


Pfam: the protein families database
Finn, RD; Bateman, A; Clements, J; Coggill, P; Eberhardt, RY; Eddy, SR; Heger, A; Hetherington, K; Holm, L; Mistry, J; Sonnhammer, ELL; Tate, J; Punta, M
Nucleic Acids Res. 2014, 42, D222-D230
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The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
Welter, D; MacArthur, J; Morales, J; Burdett, T; Hall, P; Junkins, H; Klemm, A; Flicek, P; Manolio, T; Hindorff, L; Parkinson, H
Nucleic Acids Res. 2014, 42, D1001-D1006
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JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
Mathelier, A; Zhao, XB; Zhang, AW; Parcy, F; Worsley-Hunt, R; Arenillas, DJ; Buchman, S; Chen, CY; Chou, A; Ienasescu, H; Lim, J; Shyr, C; Tan, G; Zhou, M; Lenhard, B; Sandelin, A; Wasserman, WW
Nucleic Acids Res. 2014, 42, D142-D147
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starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
Li, JH; Liu, S; Zhou, H; Qu, LH; Yang, JH
Nucleic Acids Res. 2014, 42, D92-D97
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Data, information, knowledge and principle: back to metabolism in KEGG
Kanehisa, M; Goto, S; Sato, Y; Kawashima, M; Furumichi, M; Tanabe, M
Nucleic Acids Res. 2014, 42, D199-D205
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The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
Kohler, S; Doelken, SC; Mungall, CJ; Bauer, S; Firth, HV; Bailleul-Forestier, I; Black, GCM; Brown, DL; Brudno, M; Campbell, J; FitzPatrick, DR; Eppig, JT; Jackson, AP; Freson, K; Girdea, M; Helbig, I; Hurst, JA; Jahn, J; Jackson, LG; Kelly, AM; Ledbetter
Nucleic Acids Res. 2014, 42, D966-D974
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NCBI GEO: archive for functional genomics data sets--update
Barrett, T; Wilhite, SE; Ledoux, P; Evangelista, C; Kim, IF; Tomashevsky, M; Marshall, KA; Phillippy, KH; Sherman, PM; Holko, M; Yefanov, A; Lee, H; Zhang, NG; Robertson, CL; Serova, N; Davis, S; Soboleva, A
Nucleic Acids Res. 2013, 41, D991-D995
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ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data
Yang, JH; Li, JH; Jiang, S; Zhou, H; Qu, LH
Nucleic Acids Res. 2013, 41, D177-D187
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miRBase: annotating high confidence microRNAs using deep sequencing data
Kozomara, A; Griffiths-Jones, S
Nucleic Acids Res. 2014, 42, D68-D73
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Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
Petryszak, R; Burdett, T; Fiorelli, B; Fonseca, NA; Gonzalez-Porta, M; Hastings, E; Huber, W; Jupp, S; Keays, M; Kryvych, N; McMurry, J; Marioni, JC; Malone, J; Megy, K; Rustici, G; Tang, AY; Taubert, J; Williams, E; Mannion, O; Parkinson, HE; Brazma, A
Nucleic Acids Res. 2014, 42, D926-D932
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