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NAR Top Articles - Genomics

Genomics

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August 2016


Modified ribosome profiling reveals high abundance of ribosome protected mRNA fragments derived from 3' untranslated regions
Miettinen, Teemu P.; Bjoerklund, Mikael
Nucleic Acids Res. 2015, 43, 1019-1034
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Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments
Jain, Dhawal; Baldi, Sandro; Zabel, Angelika; Straub, Tobias; Becker, Peter B.
Nucleic Acids Res. 2015, 43, 6959-6968
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metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA
Dale, RK; Matzat, LH; Lei, EP
Nucleic Acids Res. 2014, 42, 9158-9170
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The effect of tRNA levels on decoding times of mRNA codons
Dana, A; Tuller, T
Nucleic Acids Res. 2014, 42, 9171-9181
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Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics
Roy, Sugata; Schmeier, Sebastian; Arner, Erik; Alam, Tanvir; Parihar, Suraj P.; Ozturk, Mumin; Tamgue, Ousman; Kawaji, Hideya; de Hoon, Michiel J. L.; Itoh, Masayoshi; Lassmann, Timo; Carninci, Piero; Hayashizaki, Yoshihide; Forrest, Alistair R. R.; Bajic
Nucleic Acids Res. 2015, 43, 6969-6982
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Human germline and pan-cancer variomes and their distinct functional profiles
Pan, Y; Karagiannis, K; Zhang, HC; Dingerdissen, H; Shamsaddini, A; Wan, Q; Simonyan, V; Mazumder, R
Nucleic Acids Res. 2014, 42, 11570-11588
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Stable heteroplasmy at the single-cell level is facilitated by intercellular exchange of mtDNA
Jayaprakash, Anitha D.; Benson, Erica K.; Gone, Swapna; Liang, Raymond; Shim, Jaehee; Lambertini, Luca; Toloue, Masoud M.; Wigler, Mike; Aaronson, Stuart A.; Sachidanandam, Ravi
Nucleic Acids Res. 2015, 43, 2177-2187
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Identification of novel post-transcriptional features in olfactory receptor family mRNAs
Shum, Eleen Y.; Espinoza, Josh L.; Ramaiah, Madhuvanthi; Wilkinson, Miles F.
Nucleic Acids Res. 2015, 43, 9314-9326
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Identification of bacterial sRNA regulatory targets using ribosome profiling
Wang, Jing; Rennie, William; Liu, Chaochun; Carmack, Charles S.; Prevost, Karine; Caron, Marie-Pier; Masse, Eric; Ding, Ye; Wade, Joseph T.
Nucleic Acids Res. 2015, 43, 10308-10320
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The transcriptional PPAR beta/delta network in human macrophages defines a unique agonist-induced activation state
Adhikary, Till; Wortmann, Annika; Schumann, Tim; Finkernagel, Florian; Lieber, Sonja; Roth, Katrin; Toth, Philipp M.; Diederich, Wibke E.; Nist, Andrea; Stiewe, Thorsten; Kleinesudeik, Lara; Reinartz, Silke; Mueller-Bruesselbach, Sabine; Mueller, Rolf
Nucleic Acids Res. 2015, 43, 5033-5051
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