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NAR Top Articles - Genomics

Genomics

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June 2016


Modified ribosome profiling reveals high abundance of ribosome protected mRNA fragments derived from 3' untranslated regions
Miettinen, Teemu P.; Bjoerklund, Mikael
Nucleic Acids Res. 2015, 43, 1019-1034
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Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments
Jain, Dhawal; Baldi, Sandro; Zabel, Angelika; Straub, Tobias; Becker, Peter B.
Nucleic Acids Res. 2015, 43, 6959-6968
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Stable heteroplasmy at the single-cell level is facilitated by intercellular exchange of mtDNA
Jayaprakash, Anitha D.; Benson, Erica K.; Gone, Swapna; Liang, Raymond; Shim, Jaehee; Lambertini, Luca; Toloue, Masoud M.; Wigler, Mike; Aaronson, Stuart A.; Sachidanandam, Ravi
Nucleic Acids Res. 2015, 43, 2177-2187
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A comprehensive survey of non-canonical splice sites in the human transcriptome
Parada, GE; Munita, R; Cerda, CA; Gysling, K
Nucleic Acids Res. 2014, 42, 10564-10578
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Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation
Koppstein, David; Ashour, Joseph; Bartel, David P.
Nucleic Acids Res. 2015, 43, 5052-5064
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Transcriptional landscape and essential genes of Neisseria gonorrhoeae
Remmele, CW; Xian, YB; Albrecht, M; Faulstich, M; Fraunholz, M; Heinrichs, E; Dittrich, MT; Muller, T; Reinhardt, R; Rudel, T
Nucleic Acids Res. 2014, 42, 10579-10595
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Identification of bacterial sRNA regulatory targets using ribosome profiling
Wang, Jing; Rennie, William; Liu, Chaochun; Carmack, Charles S.; Prevost, Karine; Caron, Marie-Pier; Masse, Eric; Ding, Ye; Wade, Joseph T.
Nucleic Acids Res. 2015, 43, 10308-10320
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Simultaneous mapping of transcript ends at single-nucleotide resolution and identification of widespread promoter-associated non-coding RNA governed by TATA elements
Park, D; Morris, AR; Battenhouse, A; Iyer, VR
Nucleic Acids Res. 2014, 42, 3736-3749
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Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics
Roy, Sugata; Schmeier, Sebastian; Arner, Erik; Alam, Tanvir; Parihar, Suraj P.; Ozturk, Mumin; Tamgue, Ousman; Kawaji, Hideya; de Hoon, Michiel J. L.; Itoh, Masayoshi; Lassmann, Timo; Carninci, Piero; Hayashizaki, Yoshihide; Forrest, Alistair R. R.; Bajic
Nucleic Acids Res. 2015, 43, 6969-6982
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The combination of transcriptomics and informatics identifies pathways targeted by miR-204 during neurogenesis and axon guidance
Conte, I; Merella, S; Garcia-Manteiga, JM; Migliore, C; Lazarevic, D; Carrella, S; Marco-Ferreres, R; Avellino, R; Davidson, NP; Emmett, W; Sanges, R; Bockett, N; Van Heel, D; Meroni, G; Bovolenta, P; Stupka, E; Banfi, S
Nucleic Acids Res. 2014, 42, 7793-7806
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