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NAR Top Articles - Methods Online

Methods Online

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March 2016

limma powers differential expression analyses for RNA-sequencing and microarray studies
Ritchie, Matthew E.; Phipson, Belinda; Wu, Di; Hu, Yifang; Law, Charity W.; Shi, Wei; Smyth, Gordon K.
Nucleic Acids Res. 2015, 43, e47
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Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
Schirmer, Melanie; Ijaz, Umer Z.; D'Amore, Rosalinda; Hall, Neil; Sloan, William T.; Quince, Christopher
Nucleic Acids Res. 2015, 43, e37
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Multiplex CRISPR/Cas9-based genome engineering from a single lentiviral vector
Kabadi, AM; Ousterout, DG; Hilton, IB; Gersbach, CA
Nucleic Acids Res. 2014, 42, e147
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Targeting non-coding RNAs with the CRISPR/Cas9 system in human cell lines
Ho, Tsui-Ting; Zhou, Nanjiang; Huang, Jianguo; Koirala, Pratirodh; Xu, Min; Fung, Roland; Wu, Fangting; Mo, Yin-Yuan
Nucleic Acids Res. 2015, 43, e17
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Easy quantitative assessment of genome editing by sequence trace decomposition
Brinkman, EK; Chen, T; Amendola, M; van Steensel, B
Nucleic Acids Res. 2014, 42, e168
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Development of a high-resolution NGS-based HLA-typing and analysis pipeline
Wittig, Michael; Anmarkrud, Jarl A.; Kaessens, Jan C.; Koch, Simon; Forster, Michael; Ellinghaus, Eva; Hov, Johannes R.; Sauer, Sascha; Schimmler, Manfred; Ziemann, Malte; Goerg, Siegfried; Jacob, Frank; Karlsen, Tom H.; Franke, Andre
Nucleic Acids Res. 2015, 43, e70
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Accurate read-based metagenome characterization using a hierarchical suite of unique signatures
Freitas, Tracey Allen K.; Li, Po-E; Scholz, Matthew B.; Chain, Patrick S. G.
Nucleic Acids Res. 2015, 43, e69
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Impact of sequencing depth in ChIP-seq experiments
Jung, YL; Luquette, LJ; Ho, JWK; Ferrari, F; Tolstorukov, M; Minoda, A; Issner, R; Epstein, CB; Karpen, GH; Kuroda, MI; Park, PJ
Nucleic Acids Res. 2014, 42, e74
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CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity
Blake Carrington, Gaurav K. Varshney, Shawn M. Burgess and Raman Sood
Nucleic Acids Res. 2015, 43, e157
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Efficient chromosomal gene modification with CRISPR/cas9 and PCR-based homologous recombination donors in cultured Drosophila cells
Bottcher, R; Hollmann, M; Merk, K; Nitschko, V; Obermaier, C; Philippou-Massier, J; Wieland, I; Gaul, U; Forstemann, K
Nucleic Acids Res. 2014, 42, e89
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